ANSWER A AND B PLS (a) In the space below draw a free energy landscape diagram for the conversion of substrate (S) intoproduct (P) based on simple transition state theory. Next, using a dashed line, draw indicate the effectof a catalytic enzyme on the diagram. On your diagram include labels for AG for AG*.(b) Transition state analogs - molecules whose structure resembles the transition state for a particularreaction can often serve as potent competitive inhibitors of enzyme function. Explain why transitionstate analogs are such potent inhibitors?

Transition state theory states that as a substrate is converted into a product, a high energy state…

Answered: (a) In the space below draw a free…

Biochemistry

9th Edition

ISBN:9781319114671

Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.

Chapter1: Biochemistry: An Evolving Science

Section: Chapter Questions

Problem 1P

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You are working on an enzyme that obeys standard Michaelis-Menten kinetics. What variable is the V, dependant on if the concentration of the substrate is substantially higher than the concentration of the enzyme? [S] [E] [ES] O [P] O not enough information provided
A substrate is converted to a product via the reaction sequence (1) E +S ES k2 (2) ES + S ES2 k4 (3) ES2 ES +P (4) ES , E +P (a). Using pseudo-steady state hypothesis for various forms of enzyme active sites, obtain relations between rates of individual steps in the mechanism. (b). Relating concentrations of vacant active sites to concentrations of occupied active sites, obtain expressions for the rate of consumption of S, (-Rs), and the rate of formation of P, Rp. (c). What are the maximum values of (-Rs) and Rp and under which conditions are these attained?
a) Based on the data shown in the image, what are the Km and Vmax for the enzyme with L-DOPA and D-DOPA? Show any relevant analyses or calculatins you did to determine these values. ( HINT a graph might be helpful here! ) b) Based on your answer to part a, briefly describe how the kinetics of the enzyme differs for the two substrates. Which Substrate has better binding affinity to the enzyme
the kinetics of an enzyme were analyzed in the absence of inhibitors, as well as in the presence of inhibitor A and inhibitor B. Using the given data below, construct or calculate the following (make sure the label graphs with appropriate axes and equations, and circle final answers) plot 1[S] as abscissa and 1/v as ordinate for both catalyzed reaction and reaction with inhibitor. Use the same graph for both plots Calculate the; Km of enzyme in the reaction without inhibitor Km of the enzyme in the reaction with inhibitor (A dnB) Vmax of the uninhibited reaction Vmax of the inhibited reaction (A and B) What kind of inhibitor (A and B) was added to the enzyme-catalyzed reaction? Explain in terms of changes in Km and Vmax
For an enzyme-catalyzed reaction, the presence of 5 nM of a reversible inhibitor yields a Vmax value that is 80% of the value in the absence of the inhibitor. The KM value is unchanged. (a) What type of inhibition is likely occurring? (b) What proportion of the enzyme molecules have bound inhibitor? (c) Calculate the inhibition constant.
The catalytic efficiency of many enzymes depends on pH. Chymotrypsin, which has a well-known catalytic mechanism, shows a maximum value of kcat/Km at pH 8.0. A) Draw a pH curve of chymotrypsin activity over the pH range of 5 to 10 and briefly explain the rationale within the context of catalysis for your depiction. In particular, note how kcat and Km may change over this pH range. B) Enzymes of the a-amylase family catalyze a reaction by forming a covalent intermediate analogous to chymotrypsin, but to a conserved aspartate residue. Illustrate a catalytic mechanism containing a tetrahedral intermediate for a glycogen debranching enzyme based upon its potential membership in the a-amylase family. (don’t need to draw a whole glycogen)
k_1 E + SES E + P +0 k₂ S ↓↑ KIS ESS Based on this model, please answer the following questions: i) This is the model for what? Uncompet tive ii) Show the rate equation for an enzyme reaction of this type. iii) Show the Lineweaver-Burk plot for this case. A
a particular enzyme catalyzes a single reactant S to a single product P, following michaelis-menten kinetics rp=(VmaxCs) / (Km + Cs) 1. A reaction with this enzyme is carried out at very low substrate concentrations. Draw and label a curve on the plot that describes the reaction kinetics under those conditions.
In the scheme for enzymatic catalysed reaction proposed by Michaelis and Menten, the steps involve reversible formation of enzyme-substrate (ES) complex followed by conversion of the complex to the product (P) a) Derive the rate equation for enzymatic process. State an assumption made in this derivation. b) By showing appropriate reaction mechanisms and rate equations, explain how enzyme catalytic reactions may be affected by competitive inhibition
1. For enzyme catalyzed reaction: ki S + E=X (fast) k2 X -2> P + E (slow) derive the rate law and answer the following: a) What is meant by Michaelis-Menten constant km? (b) Prove that order of reaction in substrate changes from unity to zero at higher [S]. (c) What is the rate and value of km, if k2 >> k1. (d) Draw the potential energy diagram for enzyme catalyzed reaction.
Given the following information, calculate the catalytic efficiency of the enzyme. Step by step please [S] = 100 mM k1 = 10 sec-1 k2 = 3000 sec-1 k-1 = 20 sec-1 [E]T = 1 \muμM
Consider the enzyme-catalyzed conversion of a substrate S into a product in the presence of an inhibitor I with the following properties (mixed inhibition): (i) The inhibitor competes with S to bind the active site of the enzyme with dissoci- ation constant K¡ for the complex (EI). (ii) The inhibitor is also capable of binding the enzyme at a secondary site of the enzyme with dissociation constant K{ for the complex (IES). The complex (IES) is unable to form P. iii) The dissociation constants of the (IES) and (EI) complexes satisfy the relation K{ = K1/2. What is the value of the ratio vo/(k2 [E]o) when the concentration of the substrate is [S]o = KM/3 and the concentration of the inhibitor is [I]o = K{/4? Recall that KM is the Michaelis constant.

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